Usage
read_phased_vcf(vcf_file, min_maf = 0, verbose = TRUE)
Arguments
- vcf_file
Path to phased VCF or VCF.gz with 0|1 GT fields.
- min_maf
Minimum MAF. Default 0.0.
- verbose
Logical. Default TRUE.
Value
List: hap1, hap2 (SNPs x individuals, 0/1), dosage (0/1/2), snp_info, sample_ids.
